meta1: Example Meta 1 This is a meta data file for tip correction...

In jennahamlin/Tinsel: An R Shiny Application for annotating outbreak phylogenetic trees

Description

Example Meta 1

This is a meta data file for tip correction and adding a heatmap for 19 isolates of Salmonella enterica to be used with the Newick phylogenetic tree (example tree 1) and the optional genetic distance file (example gene 1).

Usage

data(meta1)

Format

An object of class spec_tbl_df (inherits from tbl_df, tbl, data.frame) with 16 rows and 3 columns.

Examples

data(meta1)
 #convert the column Display labels to the row name
meta1 <- meta1 %>% tibble::column_to_rownames(var = "Display.labels")%>%
dplyr::select(-Tip.labels)%>% #exclude column Tip.labels
ncol() #get number of columns

jennahamlin/Tinsel documentation built on Sept. 15, 2021, 9:46 a.m.