create_custom_pdict: Create Biostrings pdict (pattern dictionary) from a dataframe...
In jennylsmith/fusBreakpoint: Find fusion exon junction sequence reads from RNAseq BAM files
Description
Usage
Arguments
Examples
View source: R/seq_searches_workflow.R
Description
Create Biostrings pdict (pattern dictionary) from a dataframe for effecient sequence searches of RNAseq reads.
Usage
1
create_custom_pdict(theoretical_seqs_df)
Arguments
theoretical_seqs_df
a dataframe with computationally derived exon junction sequences
Examples
1
2
my_seqs <- data.frame(Name=as.character(1:10),Sequence=rep(c("ATCGCCCGTTA"), 10))
my_pdict_obj <- create_custom_pdict(theoretical_seqs_df=my_seqs)
jennylsmith/fusBreakpoint documentation built on Oct. 7, 2021, 8:04 p.m.
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Description Usage Arguments Examples
View source: R/seq_searches_workflow.R
Description
Create Biostrings pdict (pattern dictionary) from a dataframe for effecient sequence searches of RNAseq reads.
Usage
1 | create_custom_pdict(theoretical_seqs_df)
|
Arguments
theoretical_seqs_df |
a dataframe with computationally derived exon junction sequences |
Examples
1 2 | my_seqs <- data.frame(Name=as.character(1:10),Sequence=rep(c("ATCGCCCGTTA"), 10))
my_pdict_obj <- create_custom_pdict(theoretical_seqs_df=my_seqs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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