Files in jeremyhengjm/GibbsFlow

Gibbs Flow for Approximate Transport

R/GibbsFlow.R R/RcppExports.R R/construct_kernel.R R/gaussian_model.R R/hmc_kernel.R R/mala_kernel.R R/rm_hmc_kernel.R R/run_ais.R R/run_gibbsflow_ais.R R/run_gibbsflow_sis.R R/run_gibbsflow_sisr.R R/run_gibbsflow_smc.R R/run_smc.R R/rwmh_kernel.R R/setmytheme.R README.md inst/bananatarget/demo_gibbsflow_ais.R inst/bananatarget/demo_gibbsflow_sis.R inst/coxprocess/analyse_gibbsflow_integration_dim.R inst/coxprocess/analyse_gibbsflow_integration_initial.R inst/coxprocess/analyse_initial_result.R inst/coxprocess/analyse_normvelocity_dim.R inst/coxprocess/analyse_normvelocity_initial.R inst/coxprocess/analyse_scaling_result.R inst/coxprocess/demo_ais.R inst/coxprocess/demo_ais_ep.R inst/coxprocess/demo_ais_rmhmc.R inst/coxprocess/demo_ais_vi.R inst/coxprocess/demo_expectation_propagation.R inst/coxprocess/demo_gibbsflow_ais.R inst/coxprocess/demo_gibbsflow_ais_ep.R inst/coxprocess/demo_gibbsflow_ais_rmhmc.R inst/coxprocess/demo_gibbsflow_ais_vi.R inst/coxprocess/demo_gibbsflow_sis.R inst/coxprocess/demo_gibbsflow_sis_ep.R inst/coxprocess/demo_gibbsflow_sis_vi.R inst/coxprocess/demo_gibbsvelocity_dim.R inst/coxprocess/demo_gibbsvelocity_ep.R inst/coxprocess/demo_gibbsvelocity_vi.R inst/coxprocess/demo_svgd.R inst/coxprocess/demo_variational_inference.R inst/coxprocess/repeat_ais_ep.R inst/coxprocess/repeat_ais_rmhmc.R inst/coxprocess/repeat_ais_vi.R inst/coxprocess/repeat_gibbsflow_ais_ep.R inst/coxprocess/repeat_gibbsflow_ais_rmhmc.R inst/coxprocess/repeat_gibbsflow_ais_vi.R inst/coxprocess/repeat_gibbsflow_sis.R inst/coxprocess/repeat_gibbsflow_sis_ep.R inst/coxprocess/repeat_gibbsflow_sis_vi.R inst/coxprocess/repeats.R inst/gaussian/analyze_gibbsflow_integration.R inst/gaussian/analyze_results.R inst/gaussian/demo_ais.R inst/gaussian/demo_extreme_obs.R inst/gaussian/demo_gibbsflow_ais.R inst/gaussian/demo_gibbsflow_sis.R inst/gaussian/demo_gibbsvelocity.R inst/gaussian/demo_plotvelocity1d.R inst/gaussian/demo_svgd.R inst/gaussian/repeat_ais_dim4.R inst/gaussian/repeat_ais_dim8.R inst/gaussian/repeat_gibbsflow_ais_dim4.R inst/gaussian/repeat_gibbsflow_ais_dim8.R inst/gaussian/repeat_gibbsflow_sis_dim4.R inst/gaussian/repeat_gibbsflow_sis_dim8.R inst/gaussian/repeat_svgd_dim4.R inst/gaussian/repeat_svgd_dim8.R inst/gaussian/run_repeats.R inst/mixtureexample/demo_gibbsflow_sis.R inst/mixturemodel/analyze_gibbsflow_integration.R inst/mixturemodel/check_gibbsflow_samples.R inst/mixturemodel/covariance.R inst/mixturemodel/demo_ais.R inst/mixturemodel/demo_gibbsvelocity.R inst/mixturemodel/plot_gibbsflow_results.R inst/mixturemodel/run_gibbsflow_repeats.R inst/variancecomponents/baseball/analyse_results.R inst/variancecomponents/baseball/demo_ais.R inst/variancecomponents/baseball/demo_gibbsflow_ais.R inst/variancecomponents/baseball/demo_gibbsflow_sis.R inst/variancecomponents/baseball/demo_gibbsvelocity.R inst/variancecomponents/baseball/repeat_ais.R inst/variancecomponents/baseball/repeat_gibbsflow_ais.R inst/variancecomponents/baseball/repeat_gibbsflow_sis.R inst/variancecomponents/baseball/repeats.R inst/variancecomponents/simulated/analyse_gibbsflow_integration.R inst/variancecomponents/simulated/analyse_scaling_normvelocity.R inst/variancecomponents/simulated/analyse_scaling_results.R inst/variancecomponents/simulated/demo_ais.R inst/variancecomponents/simulated/demo_gibbsflow_ais.R inst/variancecomponents/simulated/demo_gibbsflow_sis.R inst/variancecomponents/simulated/demo_gibbsvelocity_102.R inst/variancecomponents/simulated/demo_gibbsvelocity_202.R inst/variancecomponents/simulated/demo_gibbsvelocity_27.R inst/variancecomponents/simulated/demo_gibbsvelocity_402.R inst/variancecomponents/simulated/demo_gibbsvelocity_52.R inst/variancecomponents/simulated/repeat_ais_102.R inst/variancecomponents/simulated/repeat_ais_202.R inst/variancecomponents/simulated/repeat_ais_27.R inst/variancecomponents/simulated/repeat_ais_402.R inst/variancecomponents/simulated/repeat_ais_52.R inst/variancecomponents/simulated/repeat_gibbsflow_ais_102.R inst/variancecomponents/simulated/repeat_gibbsflow_ais_202.R inst/variancecomponents/simulated/repeat_gibbsflow_ais_27.R inst/variancecomponents/simulated/repeat_gibbsflow_ais_402.R inst/variancecomponents/simulated/repeat_gibbsflow_ais_52.R inst/variancecomponents/simulated/repeat_gibbsflow_sis_102.R inst/variancecomponents/simulated/repeat_gibbsflow_sis_202.R inst/variancecomponents/simulated/repeat_gibbsflow_sis_27.R inst/variancecomponents/simulated/repeat_gibbsflow_sis_402.R inst/variancecomponents/simulated/repeat_gibbsflow_sis_52.R inst/variancecomponents/simulated/repeats.R man/GibbsFlow.Rd man/banana_gibbsflow.Rd man/banana_gradloglikelihood.Rd man/banana_gradlogprior.Rd man/banana_loglikelihood.Rd man/banana_logprior.Rd man/banana_partialderivative_loglikelihood.Rd man/banana_partialderivative_logprior.Rd man/banana_sampleprior.Rd man/baseball_artificial_logprior.Rd man/baseball_gibbsflow.Rd man/baseball_gibbsvelocity.Rd man/baseball_gradloglikelihood.Rd man/baseball_gradlogprior.Rd man/baseball_gradlogprior_artificial.Rd man/baseball_loglikelihood.Rd man/baseball_logprior.Rd man/baseball_sample_artificial_prior.Rd man/construct_kernel.Rd man/coxprocess_gibbsflow.Rd man/coxprocess_gibbsflow_ep_proposal.Rd man/coxprocess_gibbsflow_vi_proposal.Rd man/coxprocess_gibbsvelocity.Rd man/coxprocess_gibbsvelocity_ep_proposal.Rd man/coxprocess_gibbsvelocity_vi_proposal.Rd man/coxprocess_gradlog_ep_proposal.Rd man/coxprocess_gradlog_vi_proposal.Rd man/coxprocess_gradloglikelihood.Rd man/coxprocess_gradlogprior.Rd man/coxprocess_log_ep_proposal.Rd man/coxprocess_log_ep_proposal_conditional.Rd man/coxprocess_log_vi_proposal.Rd man/coxprocess_loglikelihood.Rd man/coxprocess_loglikelihood_term.Rd man/coxprocess_logprior.Rd man/coxprocess_logprior_conditional.Rd man/coxprocess_partialderivative_log_ep_proposal.Rd man/coxprocess_partialderivative_log_vi_proposal.Rd man/coxprocess_partialderivative_loglikelihood.Rd man/coxprocess_partialderivative_logprior.Rd man/coxprocess_sample_ep_proposal.Rd man/coxprocess_sample_vi_proposal.Rd man/coxprocess_sampleprior.Rd man/coxprocess_stein_variational_importance_sampling.Rd man/gaussian_gibbsflow.Rd man/gaussian_gibbsvelocity.Rd man/gaussian_gradloglikelihood.Rd man/gaussian_gradlogprior.Rd man/gaussian_log_normconst.Rd man/gaussian_loglikelihood.Rd man/gaussian_logposterior.Rd man/gaussian_logprior.Rd man/gaussian_partialderivative_loglikelihood.Rd man/gaussian_partialderivative_logprior.Rd man/gaussian_posterior_cov.Rd man/gaussian_posterior_mean.Rd man/gaussian_sampleprior.Rd man/gaussian_stein_variational_importance_sampling.Rd man/get_hmc_kernel.Rd man/get_mala_kernel.Rd man/get_rm_hmc_kernel.Rd man/get_rwmh_kernel.Rd man/gradmvnpdf.Rd man/mixtureexample_gibbsflow.Rd man/mixtureexample_gibbsvelocity.Rd man/mixtureexample_gradloglikelihood.Rd man/mixtureexample_gradlogprior.Rd man/mixtureexample_log_normconst.Rd man/mixtureexample_loglikelihood.Rd man/mixtureexample_logposterior.Rd man/mixtureexample_logprior.Rd man/mixtureexample_partialderivative_loglikelihood.Rd man/mixtureexample_partialderivative_logprior.Rd man/mixtureexample_posterior_cov.Rd man/mixtureexample_posterior_mean.Rd man/mixtureexample_sampleprior.Rd man/mixturemodel_gibbsflow.Rd man/mixturemodel_gibbsvelocity.Rd man/mixturemodel_gradloglikelihood.Rd man/mixturemodel_gradlogprior.Rd man/mixturemodel_loglikelihood.Rd man/mixturemodel_logprior.Rd man/mixturemodel_partialderivative_loglikelihood.Rd man/mixturemodel_partialderivative_logprior.Rd man/mixturemodel_sampleprior.Rd man/mvn_cholesky_factor.Rd man/mvnpdf.Rd man/mvnpdf_chol.Rd man/mvnrnd.Rd man/mvnrnd_chol.Rd man/rcpparma_hello_world.Rd man/run_ais.Rd man/run_gibbsflow_ais.Rd man/run_gibbsflow_sis.Rd man/run_gibbsflow_sisr.Rd man/run_gibbsflow_smc.Rd man/run_smc.Rd man/systematic_resampling.Rd man/varcomp_artificial_logprior.Rd man/varcomp_gibbsflow.Rd man/varcomp_gibbsvelocity.Rd man/varcomp_gradloglikelihood.Rd man/varcomp_gradlogprior.Rd man/varcomp_gradlogprior_artificial.Rd man/varcomp_loglikelihood.Rd man/varcomp_logprior.Rd man/varcomp_sample_artificial_prior.Rd