base_net_ppi: Base Network Processing For PPI Enrichment

In jgockley62/igraphNetworkExpansion: Trace Subnetworks from an AD Necortical Network of Protein-Protein Interactions

Base Network Processing For PPI Enrichment

Description

Processes a base network object for PPI enrichment tests. Takes the user supplied base network converts to a data frame. Removes duplicated edges. Tabulates the probability of seeing an interaction of the types specified in 'vect'.

Usage

base_net_ppi(i_net, vect, filt = "Edge")

Arguments

i_net	the initial network object eg. basic_network
vect	the edge attributes to tabulate
filt	the edge attribute name to remove duplicates of default. Edge

Examples

## Not run: 
data(basic_network)
base_net_ppi( 
 i_net = basic_network, 
 vect =c( 'Brain', 'Heart', 'Kidney', 'Liver',
    'Lung', 'Muscle', 'Thymus'
  ) 
)

## End(Not run)

jgockley62/igraphNetworkExpansion documentation built on April 15, 2022, 12:14 a.m.