basic_network_table: Basic Network Table

In jgockley62/igraphNetworkExpansion: Trace Subnetworks from an AD Necortical Network of Protein-Protein Interactions

Basic Network Table

Description

The basic Pathway Commons table that comprises the foundation of the network This is all SIF Pathway commons interactions loaded into a network. The CHEMI interactions are present. The igraph network object consisting of 30,910 genes and 1,902,605 interactions.

Usage

basic_network_table

Format

A data table

basic_network_table$to

Origin Vertex

basic_network_table$from

Target Vertex

basic_network_table$interaction

Type of interaction

basic_network_table$Occurance

how many Pathway Commons databases record an interaction between to and from vertex

basic_network_table$UniqCol

The Unique Code of the entire interaction

basic_network_table$pathway

The Pathway(s) in Pathway commons this interaction is documented in as a list object

basic_network_table$EdgeRep

How many interaction types are there between to and from vertacies

basic_network_table$Edge

The to:from name desigantion of the edge

basic_network_table$SumOccurancel

how many times is to vertex connected to from vertex across all pathway commons data bases and interaction types

basic_network_table$Uniq_Brain

Edges with a PPI in Skinnider et.al 2021 that is unique to brain are denoted with a 1

basic_network_table$Brain

Edges with a PPI in Skinnider et.al 2021 that in brain are denoted with a 1

basic_network_table$Uniq_Heart

Edges with a PPI in Skinnider et.al 2021 that is unique to Heart are denoted with a 1

basic_network_table$Heart

Edges with a PPI in Skinnider et.al 2021 that in Heart are denoted with a 1

basic_network_table$Uniq_Kidney

Edges with a PPI in Skinnider et.al 2021 that is unique to Kidney are denoted with a 1

basic_network_table$Kidney

Edges with a PPI in Skinnider et.al 2021 that in Kidney are denoted with a 1

basic_network_table$Uniq_Liver

Edges with a PPI in Skinnider et.al 2021 that is unique to Liver are denoted with a 1

basic_network_table$Liver

Edges with a PPI in Skinnider et.al 2021 that in Liver are denoted with a 1

basic_network_table$Uniq_Lung

Edges with a PPI in Skinnider et.al 2021 that is unique to Lung are denoted with a 1

basic_network_table$Lung

Edges with a PPI in Skinnider et.al 2021 that in Lung are denoted with a 1

basic_network_table$Uniq_Muscle

Edges with a PPI in Skinnider et.al 2021 that is unique to Muscle are denoted with a 1

basic_network_table$Muscle

Edges with a PPI in Skinnider et.al 2021 that in Muscle are denoted with a 1

basic_network_table$Uniq_Thymus

Edges with a PPI in Skinnider et.al 2021 that is unique to Thymus are denoted with a 1

basic_network_table$Thymus

Edges with a PPI in Skinnider et.al 2021 that in Thymus are denoted with a 1

basic_network_table$all_nonbrain

Edges with a PPI in Skinnider et.al 2021 that is observed in any tissue except Braing are denoted with a 1

basic_network_table$all_uniq_nonbrain

Edges with a PPI in Skinnider et.al 2021 that are observed uniquely in any tissue except Brain are denoted with a 1

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jgockley62/igraphNetworkExpansion documentation built on April 15, 2022, 12:14 a.m.