Files in jianhaizhang/spatialHeatmap

spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions

R/AllClasses.R R/AllGenerics.R R/adj_mod.R R/aggr_rep.R R/cache.R R/cell_group.R R/check_data.R R/cluster_cell.R R/coclus_opt.R R/cocluster.R R/col_bar.R R/com_factor.R R/covis.R R/custom_shiny.R R/cut_dendro.R R/cvt_id.R R/data_ref.R R/database.R R/deseq2.R R/desired_bulk_shiny.R R/detect_cluster.R R/dim_color.R R/dim_color2cell.R R/dim_color_coclus.R R/dim_color_idp.R R/dim_decon.R R/dim_opt.R R/dim_srsc.R R/edgeR.R R/edit_tar.R R/filter_asg.R R/filter_cell.R R/filter_data.R R/gg_2lgd.R R/gg_lgd.R R/helper.R R/html_ly.R R/lay_shm.R R/limma.R R/list_shm.R R/matrix_hm.R R/network.R R/nn_graph.R R/nod_lin.R R/norm_cell.R R/norm_data.R R/norm_srsc.R R/opt_bar.R R/opt_setting.R R/opt_violin.R R/optimal_k.R R/path_br.R R/path_br_all.R R/plot_dim.R R/plot_kmeans.R R/process_cell_meta.R R/qc_cell.R R/read_fr.R R/read_svg.R R/reduce_dim.R R/reduce_rep.R R/refine_asg.R R/remote_asvg_data.R R/return_feature.R R/sc_qc_plot.R R/sce_sub.R R/shiny_shm.R R/shm.R R/sort_gen_con.R R/spatial_enrich.R R/spatial_hm.R R/sphm_class.R R/sphm_methods.R R/sub_na.R R/submatrix.R R/svg.R R/svg_attr.R R/svg_df.R R/svg_methods.R R/true_bulk.R R/up_dn.R R/update_feature.R R/video.R R/wng.R R/write_svg.R README.md inst/extdata/shinyApp/R/analysis_server.R inst/extdata/shinyApp/R/analysis_ui.R inst/extdata/shinyApp/R/covis_auto_server.R inst/extdata/shinyApp/R/covis_auto_ui.R inst/extdata/shinyApp/R/covis_man_server.R inst/extdata/shinyApp/R/covis_man_ui.R inst/extdata/shinyApp/R/dat_all.R inst/extdata/shinyApp/R/data_server.R inst/extdata/shinyApp/R/data_ui.R inst/extdata/shinyApp/R/deg_server.R inst/extdata/shinyApp/R/deg_ui.R inst/extdata/shinyApp/R/desired_bulk_server.R inst/extdata/shinyApp/R/desired_bulk_ui.R inst/extdata/shinyApp/R/dim_server.R inst/extdata/shinyApp/R/dim_ui.R inst/extdata/shinyApp/R/global.R inst/extdata/shinyApp/R/match_server.R inst/extdata/shinyApp/R/match_ui.R inst/extdata/shinyApp/R/radioTooltip.R inst/extdata/shinyApp/R/scell_server.R inst/extdata/shinyApp/R/scell_ui.R inst/extdata/shinyApp/R/search_server.R inst/extdata/shinyApp/R/search_ui.R inst/extdata/shinyApp/R/server.R inst/extdata/shinyApp/R/shm_server.R inst/extdata/shinyApp/R/shm_ui.R inst/extdata/shinyApp/R/tailor_match_server.R inst/extdata/shinyApp/R/tailor_match_ui.R inst/extdata/shinyApp/R/ui.R inst/extdata/shinyApp/R/upload_server.R inst/extdata/shinyApp/R/upload_ui.R inst/extdata/shinyApp/app.R inst/extdata/shinyApp/desired_bulk_app.R inst/script/cocluster_data.R inst/script/fun_cocluster.R inst/script/sc_spatial_data.R inst/script/shm_data.R inst/unitTests/test_adj_mod.R inst/unitTests/test_filter_data.R man/SPHM.Rd man/SPHMMethods.Rd man/SVG.Rd man/SVGMethods.Rd man/SpatialEnrichment.Rd man/aSVG.remote.repo.Rd man/adj_mod.Rd man/aggr_rep.Rd man/cell_group.Rd man/cluster_cell.Rd man/coclus_opt.Rd man/cocluster.Rd man/com_factor.Rd man/covis.Rd man/custom_shiny.Rd man/cut_dendro.Rd man/cvt_id.Rd man/data_ref.Rd man/database.Rd man/edit_tar.Rd man/filter_data.Rd man/matrix_hm.Rd man/network.Rd man/norm_cell.Rd man/norm_data.Rd man/norm_srsc.Rd man/opt_bar.Rd man/opt_setting.Rd man/opt_violin.Rd man/optimal_k.Rd man/plot_dim.Rd man/plot_kmeans.Rd man/plot_meta.Rd man/process_cell_meta.Rd man/qc_cell.Rd man/read_cache.Rd man/read_fr.Rd man/read_svg.Rd man/reduce_dim.Rd man/reduce_rep.Rd man/return_feature.Rd man/save_cache.Rd man/shiny_shm.Rd man/shm.Rd man/spatialHeatmap-package.Rd man/spatial_hm.Rd man/submatrix.Rd man/true_bulk.Rd man/update_feature.Rd man/write_svg.Rd tests/runTests.R vignettes/covisualize.Rmd vignettes/custom_SVGs.Rmd vignettes/spatialHeatmap.Rmd