Files in jianhong/GeneNetworkBuilder
GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data
DESCRIPTION
NAMESPACE
NEWS
R/GeneNetworkBuilder.R
R/RcppExports.R
R/applications.R
R/browseNetwork.R
R/cy3Network.R
R/dataset.R
R/exportNetwork.R
R/networkBuilder.R
R/networkFromGenes.R
R/subsetNetwork.R
README.md
data/ce.IDsMap.rda
data/ce.interactionmap.rda
data/ce.mapIDs.rda
data/ce.miRNA.map.rda
data/datalist
data/example.data.rda
data/hs.IDsMap.rda
data/hs.interactionmap.rda
data/hs.mapIDs.rda
data/hs.miRNA.map.rda
inst/htmlwidgets/browseNetwork.js
inst/htmlwidgets/browseNetwork.yaml
inst/htmlwidgets/lib/cytoscape/cytoscape.min.js
inst/htmlwidgets/lib/exportbox/cytoscape-exportbox.css
inst/htmlwidgets/lib/exportbox/cytoscape-exportbox.js
inst/htmlwidgets/lib/fontawesome/css/font-awesome.css
inst/htmlwidgets/lib/fontawesome/css/font-awesome.min.css
inst/htmlwidgets/lib/fontawesome/fonts/FontAwesome.otf
inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.eot
inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.svg
inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.ttf
inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.woff
inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.woff2
inst/htmlwidgets/lib/fontawesome/less/animated.less
inst/htmlwidgets/lib/fontawesome/less/bordered-pulled.less
inst/htmlwidgets/lib/fontawesome/less/core.less
inst/htmlwidgets/lib/fontawesome/less/fixed-width.less
inst/htmlwidgets/lib/fontawesome/less/font-awesome.less
inst/htmlwidgets/lib/fontawesome/less/icons.less
inst/htmlwidgets/lib/fontawesome/less/larger.less
inst/htmlwidgets/lib/fontawesome/less/list.less
inst/htmlwidgets/lib/fontawesome/less/mixins.less
inst/htmlwidgets/lib/fontawesome/less/path.less
inst/htmlwidgets/lib/fontawesome/less/rotated-flipped.less
inst/htmlwidgets/lib/fontawesome/less/screen-reader.less
inst/htmlwidgets/lib/fontawesome/less/stacked.less
inst/htmlwidgets/lib/fontawesome/less/variables.less
inst/htmlwidgets/lib/fontawesome/scss/_animated.scss
inst/htmlwidgets/lib/fontawesome/scss/_bordered-pulled.scss
inst/htmlwidgets/lib/fontawesome/scss/_core.scss
inst/htmlwidgets/lib/fontawesome/scss/_fixed-width.scss
inst/htmlwidgets/lib/fontawesome/scss/_icons.scss
inst/htmlwidgets/lib/fontawesome/scss/_larger.scss
inst/htmlwidgets/lib/fontawesome/scss/_list.scss
inst/htmlwidgets/lib/fontawesome/scss/_mixins.scss
inst/htmlwidgets/lib/fontawesome/scss/_path.scss
inst/htmlwidgets/lib/fontawesome/scss/_rotated-flipped.scss
inst/htmlwidgets/lib/fontawesome/scss/_screen-reader.scss
inst/htmlwidgets/lib/fontawesome/scss/_stacked.scss
inst/htmlwidgets/lib/fontawesome/scss/_variables.scss
inst/htmlwidgets/lib/fontawesome/scss/font-awesome.scss
inst/htmlwidgets/lib/jquery/jquery.min.js
inst/htmlwidgets/lib/layout/cola.v3.min.js
inst/htmlwidgets/lib/layout/cytoscape-cola.js
inst/htmlwidgets/lib/layout/cytoscape-cose-bilkent.js
inst/htmlwidgets/lib/layout/cytoscape-dagre.js
inst/htmlwidgets/lib/layout/cytoscape-spread.js
inst/htmlwidgets/lib/layout/dagre.min.js
inst/htmlwidgets/lib/panzoom/cytoscape-panzoom.js
inst/htmlwidgets/lib/panzoom/cytoscape.js-panzoom.css
inst/htmlwidgets/lib/qtip2/cytoscape-qtip.js
inst/htmlwidgets/lib/qtip2/jquery.qtip.min.css
inst/htmlwidgets/lib/qtip2/jquery.qtip.min.js
inst/htmlwidgets/lib/searchbox/cytoscape-searchbox.css
inst/htmlwidgets/lib/searchbox/cytoscape-searchbox.js
inst/unitTests/test_geneNetworkBuilder.R
man/GeneNetworkBuilder-package.Rd
man/browseNetwork-shiny.Rd
man/browseNetwork.Rd
man/buildNetwork.Rd
man/ce.IDsMap.Rd
man/ce.interactionmap.Rd
man/ce.mapIDs.Rd
man/ce.miRNA.map.Rd
man/convertID.Rd
man/cy3Network.Rd
man/example.data.Rd
man/exportNetwork.Rd
man/filterNetwork.Rd
man/hs.IDsMap.Rd
man/hs.interactionmap.Rd
man/hs.mapIDs.Rd
man/hs.miRNA.map.Rd
man/networkFromGenes.Rd
man/polishNetwork.Rd
man/saveXGMML.Rd
man/subsetNetwork.Rd
man/uniqueExprsData.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/geneTree.cpp
src/geneTree.h
src/nodefilter.cpp
tests/runTests.R
vignettes/GeneNetworkBuilder_vignettes.Rmd
vignettes/GeneNetworkFromGenes.Rmd
vignettes/bibliography.bib
vignettes/nature.csl
vignettes/workflow.png
