buildNetwork: construct the regulatory network

In jianhong/GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

construct the regulatory network

Description

Get all the connections of interesting genes from regulatory map.

Usage

buildNetwork(TFbindingTable, interactionmap, level = 3)

Arguments

TFbindingTable	a matrix or data.frame with interesting genes. Column names must be 'from', 'to'
interactionmap	Transcription regulatory map. Column names of interactionmap must be 'from','to'
level	Depth of node path

Value

a dataframe or matrix of all the connections of interesting genes

Examples

data("ce.interactionmap")
data("example.data")
xx<-buildNetwork(example.data$ce.bind, ce.interactionmap, level=2)

jianhong/GeneNetworkBuilder documentation built on Oct. 26, 2023, 3:45 a.m.