example.data: example datasets for documentation

In jianhong/GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

example datasets for documentation

Description

example.data is a data list of example datasets. There is a dataset example.microarrayData, which is the example of gene expression data of a gene-chip result of C.elegans. Dataset example.data$ce.bind is a TF binding matrix of ChIP-chip experiment of C.elegans. Dataset example.data$cd.exprData is expression data of a gene-chip result of C.elegans. Dataset example.data$hs.bind is a TF binding matrix of ChIP-chip experiment of H.sapiens. Dataset example.data$hs.exprData is expression data of a combination of a gene-chip result and a RNA-SEQ result of H.sapiens.

Usage

example.data

Format

dataframe

Details

The dataset example.microarrayData contains columns: ID, logFC, AveExpr, t, P.Value, adj.P.Val, B, genes and symbols. The columns of ID, logFC and symbols are required by GeneNetworkBuilder. The dataset example.data$hs.bind contains columns: ID, symbols, logFC and P.Value. The dataset example.data$hs.exprData contains columns: from and to.

Examples

data(example.data)
names(example.data)
head(example.data$example.microarrayData)
head(example.data$ce.bind)
head(example.data$ce.exprData)
head(example.data$hs.bind)
head(example.data$hs.exprData)

jianhong/GeneNetworkBuilder documentation built on Nov. 4, 2024, 5:54 a.m.