README.md

In jianhong/GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

GeneNetworkBuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Installation

To install this package, start R and enter:

library(BiocManager)
BiocManager::install("GeneNetworkBuilder")

Documentation

To view documentation of GeneNetworkBuilder, start R and enter:

browseVignettes("GeneNetworkBuilder")

jianhong/GeneNetworkBuilder documentation built on Oct. 26, 2023, 3:45 a.m.