jianhong/GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Getting started

Package details

AuthorJianhong Ou, Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Bioconductor views GraphAndNetwork Microarray Sequencing
MaintainerJianhong Ou <jianhong.ou@duke.edu>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jianhong/GeneNetworkBuilder documentation built on May 6, 2023, 3:33 a.m.