Man pages for jianhong/GeneNetworkBuilder
GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data
| browseNetwork | browse network |
| browseNetwork-shiny | Shiny bindings for browseNetwork |
| buildNetwork | construct the regulatory network |
| ce.IDsMap | C.elegns gene name to wormbase identifier map |
| ce.interactionmap | transcript regulatory map of _Caenorhabditis elegans_ |
| ce.mapIDs | map file for converting from wormbase identifier to... |
| ce.miRNA.map | micro RNA of _Caenorhabditis elegans_ |
| convertID | convert gene IDs by id map |
| cy3Network | visualize the network by Cy3 |
| example.data | example datasets for documentation |
| exportNetwork | Save network in various formats |
| filterNetwork | filter the regulatory network table by expression profile |
| GeneNetworkBuilder-package | Build Regulatory Network from ChIP-chip/ChIP-seq and... |
| hs.IDsMap | map file for converting gene name or sequence name of _Homo... |
| hs.interactionmap | transcript regulation map of _Homo sapiens_ |
| hs.mapIDs | map file for converting from Entrez identifier to _Homo... |
| hs.miRNA.map | micro RNA of _Homo sapiens_ |
| networkFromGenes | Build network by a list of given genes |
| polishNetwork | generate an object of grahpNEL to represent the regulation... |
| saveXGMML | Save network as xgmml |
| subsetNetwork | Subset a polished network |
| uniqueExprsData | unique the microarray data |
