compareProfiles: comapre w pcm
In jianhong/motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
compareProfiles R Documentation
comapre w pcm
Description
compare two pcm objects
Usage
compareProfiles(
pcm1,
pcm2,
method = c("Smith-Waterman", "Needleman-Wunsch"),
pseudo = 1,
revcomp = TRUE
)
Arguments
pcm1, pcm2
object of pcm
method
Alignment method. "Smith-Waterman" or "Needleman-Wunsch".
Default is "Smith-Waterma"
pseudo
pseudocount
revcomp
Check reverseComplement or not.
Value
a list with names: motif1, motif2, alignmentScore,
startPos1, startPos2, endPos1, endPos2, alignmentLength.
jianhong/motifStack documentation built on Jan. 31, 2024, 5:03 a.m.
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| compareProfiles | R Documentation |
comapre w pcm
Description
compare two pcm objects
Usage
compareProfiles(
pcm1,
pcm2,
method = c("Smith-Waterman", "Needleman-Wunsch"),
pseudo = 1,
revcomp = TRUE
)
Arguments
pcm1, pcm2 |
object of pcm |
method |
Alignment method. "Smith-Waterman" or "Needleman-Wunsch". Default is "Smith-Waterma" |
pseudo |
pseudocount |
revcomp |
Check reverseComplement or not. |
Value
a list with names: motif1, motif2, alignmentScore, startPos1, startPos2, endPos1, endPos2, alignmentLength.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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