pfm2pwm: convert pfm object to PWM
In jianhong/motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
View source: R/publicUtilities.R
pfm2pwm R Documentation
convert pfm object to PWM
Description
convert pfm object to PWM
Usage
pfm2pwm(x, N = 10000)
Arguments
x
an object of pfm or pcm or matrix
N
Total number of event counts used for pfm generation.
Value
A numeric matrix representing the Position Weight Matrix for PWM.
Author(s)
Jianhong Ou
See Also
PWM
Examples
library("MotifDb")
matrix.fly <- query(MotifDb, "Dmelanogaster")
pfm2pwm(matrix.fly[[1]])
jianhong/motifStack documentation built on Nov. 5, 2024, 7:47 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/publicUtilities.R
| pfm2pwm | R Documentation |
convert pfm object to PWM
Description
convert pfm object to PWM
Usage
pfm2pwm(x, N = 10000)
Arguments
x |
an object of |
N |
Total number of event counts used for pfm generation. |
Value
A numeric matrix representing the Position Weight Matrix for PWM.
Author(s)
Jianhong Ou
See Also
PWM
Examples
library("MotifDb")
matrix.fly <- query(MotifDb, "Dmelanogaster")
pfm2pwm(matrix.fly[[1]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.