codonUsage: Start or Stop codon usage
In jianhong/ribosomeProfilingQC: Ribosome Profiling Quality Control
codonUsage R Documentation
Start or Stop codon usage
Description
Calculate the start or stop codon usage for the identified CDSs.
Usage
codonUsage(reads, start = TRUE, genome)
Arguments
reads
Output of assignReadingFrame.
start
Calculate for start codon or stop codon.
genome
A BSgenome object.
Value
Table of codon usage.
Examples
pcs <- readRDS(system.file("extdata", "samplePc.rds",
package="ribosomeProfilingQC"))
library(BSgenome.Drerio.UCSC.danRer10)
codonUsage(pcs, genome=Drerio)
codonUsage(pcs, start=FALSE, genome=Drerio)
jianhong/ribosomeProfilingQC documentation built on April 15, 2024, 7:10 p.m.
R Package Documentation
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| codonUsage | R Documentation |
Start or Stop codon usage
Description
Calculate the start or stop codon usage for the identified CDSs.
Usage
codonUsage(reads, start = TRUE, genome)
Arguments
reads |
Output of assignReadingFrame. |
start |
Calculate for start codon or stop codon. |
genome |
A BSgenome object. |
Value
Table of codon usage.
Examples
pcs <- readRDS(system.file("extdata", "samplePc.rds",
package="ribosomeProfilingQC"))
library(BSgenome.Drerio.UCSC.danRer10)
codonUsage(pcs, genome=Drerio)
codonUsage(pcs, start=FALSE, genome=Drerio)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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