readsLenToKeep: Get reads length to keep by cutoff percentage

In jianhong/ribosomeProfilingQC: Ribosome Profiling Quality Control

Get reads length to keep by cutoff percentage

Description

Set the percentage to filter the reads.

Usage

readsLenToKeep(readsLengthDensity, cutoff = 0.8)

Arguments

readsLengthDensity	Output of summaryReadsLength
cutoff	Cutoff value.

Value

Reads length to be kept.

Examples

reads <- GRanges("chr1", ranges=IRanges(seq.int(100), width=1),
                 qwidth=sample(25:31, size = 100, replace = TRUE,
                               prob = c(.01, .01, .05, .1, .77, .05, .01)))
readsLenToKeep(summaryReadsLength(reads, plot=FALSE))

jianhong/ribosomeProfilingQC documentation built on April 15, 2024, 7:10 p.m.