cvgd-class: Class '"cvgd"'

In jianhong/ribosomeProfilingQC: Ribosome Profiling Quality Control

Class "cvgd"

Description

An object of class "cvgd" represents output of coverageDepth.

Usage

cvgd(...)

## S4 method for signature 'cvgd'
x$name

## S4 replacement method for signature 'cvgd'
x$name <- value

## S4 method for signature 'cvgd,ANY,ANY'
x[[i, j, ..., exact = TRUE]]

## S4 replacement method for signature 'cvgd,ANY,ANY,ANY'
x[[i, j, ...]] <- value

## S4 method for signature 'cvgd'
show(object)

Arguments

...	Each argument in ... becomes an slot in the new "cvgd"-class.
x	cvgd object.
name	A literal character string or a name (possibly backtick quoted).
value	value to replace.
i, j	indexes specifying elements to extract or replace.
exact	see Extract
object	cvgd object.

Value

A cvgd object.

Slots

coverage

"list", list of CompressedRleList, specify the coverage of features of each sample.

granges

CompressedGRangesList, specify the features.

Examples

cvgd()

jianhong/ribosomeProfilingQC documentation built on Nov. 3, 2024, 6:33 p.m.