R/AnceTran.R

In jingwyang/AnceTran: the R package for analyzing TF-binding evolution based on ChIP-seq data

#' @title AnceTran: the package for comparative phylogenetic analysis of transcriptome  data
#'
#' @description \code{AnceTran} is an R package that performs transcriptome phylogenetic analysis
#' based on RNA-seq expression data and ChIP-seq TF-binding data,
#' including optimized input formatting, normalization
#' and pair-wise distance evaluation, character tree building and
#' ancestral transcriptome state inference.
#' @name AnceTran
#'
#' @docType package
#'
#' @import ape
#' @import phytools
#' @import limma
#' @author Jingw Yang (jingwyang.fudan@gmail.com);  Hang Ruan (hang.ruan@hotmail.com).

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