img2landmark: Convert image to semi-landmarks
In jinyung/otolith: Identification of fish otolith using digital images

Description Usage Arguments Value See Also

A wrapper function to convert image files to semi-landmarks

img2landmark(path, type = c("dir", "file"), threshold = 0.3,
  resize = TRUE, nd = 50, saveoutline = TRUE, savelandmark = TRUE,
  plot = c("no", "overlay", "plain"), savedir, suppress = FALSE, start,
  extract = c(1, 6))

`path`	path(s) to directory (containing the images, accepts multiple directories) or image file(s) to be processed
`type`	type of input. select folder (`"dir"`; default) or select image files (`"files"`)
`threshold`	numeric. argument passed to `extractout`
`resize`	logical. whether to resize the image when reading the image. argument passed to `loadimg`
`saveoutline`	logical. whether to save the outline. If `TRUE`, .csv file(s) of the coordinates of each image will be saved
`savelandmark`	logical. whether to save the sampled semi-landmarks. If `TRUE`, .csv file(s) of the coordinates of each image will be saved and a .tps file of all images will be saved.
`savedir`	directory path. folder for files to be saved in if `saveoutline=TRUE` or `savelandmark=TRUE` or `plot != "no"` (default).
`nd`	numeric. argument passed to `equaldist`
`suppress`	logical. whether to supress the system messages on running status.
`plot`	`"no"` = no plot; `"overlay"` = plot of outline and semi-landmarks overlaid on image; `"plain"` = plot of plain outline
`start`	numeric. number of which the loop start, useful when `type = "dir"` with a lot of images to process and processing had to be restarted.
`extract`	argument passed to `getclass`