isTreeBased: Determine whether a network is tree-based
In jjustison/SiPhyNetwork: A Phylogenetic Simulator for Reticulate Evolution
isTreeBased R Documentation
Determine whether a network is tree-based
Description
This function determines whether a network is tree-based
Usage
isTreeBased(net)
Arguments
net
A phylogenetic network of class evonet.
Details
A phylogenetic network is said to be tree-based if it can be constructed with a base tree that has additional linking arcs added. See jetten 2016 Corollary 2.11 for the algorithm used to determine whether the network is tree-based
Value
A logical that is TRUE if the network is tree-based
Examples
net<- read.net(text= "((A:7,((B:2,C:2):3)#H1:2::0.6):3,(D:6,#H1:1::0.4):4);")
isTreeBased(net) ##returns TRUE
jjustison/SiPhyNetwork documentation built on Sept. 14, 2024, 8:58 a.m.
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| isTreeBased | R Documentation |
Determine whether a network is tree-based
Description
This function determines whether a network is tree-based
Usage
isTreeBased(net)
Arguments
net |
A phylogenetic network of class |
Details
A phylogenetic network is said to be tree-based if it can be constructed with a base tree that has additional linking arcs added. See jetten 2016 Corollary 2.11 for the algorithm used to determine whether the network is tree-based
Value
A logical that is TRUE if the network is tree-based
Examples
net<- read.net(text= "((A:7,((B:2,C:2):3)#H1:2::0.6):3,(D:6,#H1:1::0.4):4);")
isTreeBased(net) ##returns TRUE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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