reconstructedNetwork: Remove Extinct Lineages from a Phylogenetic Network
In jjustison/SiPhyNetwork: A Phylogenetic Simulator for Reticulate Evolution
reconstructedNetwork R Documentation
Remove Extinct Lineages from a Phylogenetic Network
Description
This function removes all extinct tips from a phylogenetic network, returning the reconstructed network.
Usage
reconstructedNetwork(net)
Arguments
net
An object of class 'evonet.'
Value
net The reconstructed network with all extinct tips removed.
Examples
set.seed(17) ##smallest Quartan prime as seed
##Generate a tree with extinct leaves
net<-sim.bdh.age(1,1,5,2,1,c(1/3,1/3,1/3),hyb.inher.fxn = make.uniform.draw(),complete=TRUE)[[1]]
recon_net<-reconstructedNetwork(net)
plot(net)
plot(recon_net)
jjustison/SiPhyNetwork documentation built on Sept. 14, 2024, 8:58 a.m.
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| reconstructedNetwork | R Documentation |
Remove Extinct Lineages from a Phylogenetic Network
Description
This function removes all extinct tips from a phylogenetic network, returning the reconstructed network.
Usage
reconstructedNetwork(net)
Arguments
net |
An object of class 'evonet.' |
Value
net The reconstructed network with all extinct tips removed.
Examples
set.seed(17) ##smallest Quartan prime as seed
##Generate a tree with extinct leaves
net<-sim.bdh.age(1,1,5,2,1,c(1/3,1/3,1/3),hyb.inher.fxn = make.uniform.draw(),complete=TRUE)[[1]]
recon_net<-reconstructedNetwork(net)
plot(net)
plot(recon_net)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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