Files in jjustison/SiPhyNetwork

A Phylogenetic Simulator for Reticulate Evolution

.Rbuildignore

.github/workflows/r.yml

.gitignore

CRAN-RELEASE

CRAN-SUBMISSION

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/NetworkSim.R R/RcppExports.R R/SiPhyNetwork-package.R R/make.functions.R R/network.gsa.R R/read.net.R R/sim.bdh.age.R R/sim.bdh.age.help.R R/sim.bdh.taxa.R R/sim.bdh.taxa.help.R R/utils.R R/write.net.R README.md

SiPhyNetwork.Rproj

addressed_changes.txt

cran-comments.md

docs/404.html

docs/LICENSE.html

docs/articles/figures/hybridization_types.png

docs/articles/index.html

docs/articles/introduction.html

docs/articles/introduction_files/figure-html/unnamed-chunk-11-1.png

docs/articles/introduction_files/figure-html/unnamed-chunk-5-1.png

docs/articles/introduction_files/figure-html/unnamed-chunk-5-2.png

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docs/articles/introduction_files/figure-html/unnamed-chunk-9-1.png

docs/articles/introduction_files/figure-html/unnamed-chunk-9-2.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/biconnectedComponents.html

docs/reference/deleteTips.html

docs/reference/figures/README-unnamed-chunk-3-1.png

docs/reference/getNetworkLevel.html

docs/reference/incompleteSampling.html

docs/reference/index.html

docs/reference/isFUstable.html

docs/reference/isNormal.html

docs/reference/isTreeBased.html

docs/reference/isTreeChild.html

docs/reference/ltt.network.html

docs/reference/make.beta.draw.html

docs/reference/make.categorical.draw.html

docs/reference/make.exp.decay.html

docs/reference/make.linear.decay.html

docs/reference/make.polynomial.decay.html

docs/reference/make.stepwise.html

docs/reference/make.trait.model.html

docs/reference/make.uniform.draw.html

docs/reference/network.gsa.html

docs/reference/plottable.net.html

docs/reference/read.net.html

docs/reference/reconstructedNetwork-1.png

docs/reference/reconstructedNetwork-2.png

docs/reference/reconstructedNetwork.html

docs/reference/sim.bdh.age.html

docs/reference/sim.bdh.taxa.gsa.html

docs/reference/sim.bdh.taxa.ssa.html

docs/reference/write.net.html

docs/sitemap.xml

man/biconnectedComponents.Rd man/deleteTips.Rd

man/figures/README-unnamed-chunk-3-1.png

man/getNetworkLevel.Rd man/incompleteSampling.Rd man/isFUStable.Rd man/isNormal.Rd man/isTreeBased.Rd man/isTreeChild.Rd man/ltt.network.Rd man/make.beta.draw.Rd man/make.categorical.draw.Rd man/make.exp.decay.Rd man/make.linear.decay.Rd man/make.polynomial.decay.Rd man/make.stepwise.Rd man/make.trait.model.Rd man/make.uniform.draw.Rd man/network.gsa.Rd man/plottable.net.Rd man/read.net.Rd man/reconstructedNetwork.Rd man/sim.bdh.age.Rd man/sim.bdh.taxa.gsa.Rd man/sim.bdh.taxa.ssa.Rd man/write.net.Rd

src-i386/RcppExports.cpp

src-i386/RcppExports.o

src-i386/code.cpp

src-i386/code.o

src/.gitignore

src/RcppExports.cpp

src/RcppExports.o

src/code.cpp

src/code.o

tests/testthat.R tests/testthat/test-write.R

vignettes/figures/hybridization_types.png

vignettes/introduction.Rmd

vignettes/introduction.html

vignettes/refs.bib

jjustison/SiPhyNetwork documentation built on Sept. 14, 2024, 8:58 a.m.