Files in jlab-code/AlphaBeta
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/ABneutral.R R/ABneutralSOMA.R R/ABnull.R R/ABplot.R R/ABselectMM.R R/ABselectMMSOMA.R R/ABselectUU.R R/ABselectUUSOMA.R R/BOOTmodel.R R/D-matrices.R R/FtestRSS.R R/buildPedigree.R R/checkFun.R R/convertDMATRIX.R R/dataRead.R R/plotPedigree.R R/rcMethlvl.R R/time.R README.md
inst/extdata/data/G0.txt
inst/extdata/data/G1_2.txt
inst/extdata/data/G4_2.txt
inst/extdata/data/G4_8.txt
inst/extdata/dm/Col_CG_global_estimates_ABneutral.Rdata
inst/extdata/dm/edgelist.fn
inst/extdata/dm/nodelist.fn
inst/extdata/dm/output.rds
inst/extdata/dm/tmp_nodelist.fn
inst/extdata/models/ABneutralSOMA_CG_Boot_global_estimates.Rdata
inst/extdata/models/ABneutralSOMA_CG_global_estimates.Rdata
inst/extdata/models/ABneutral_Boot_CG_global_estimates.Rdata
inst/extdata/models/ABneutral_CG_global_estimates.Rdata
inst/extdata/models/ABnull_CG_global_estimates.Rdata
inst/extdata/models/ABselectMMSOMA_CG_global_estimates.Rdata
inst/extdata/models/ABselectMM_CG_global_estimates.Rdata
inst/extdata/models/ABselectUUSOMA_CG_global_estimates.Rdata
inst/extdata/models/ABselectUU_CG_global_estimates.Rdata
inst/extdata/soma/SOMA_edgelist1.fn
inst/extdata/soma/SOMA_edgelist2.fn
inst/extdata/soma/SOMA_nodelist1.fn
inst/extdata/soma/SOMA_nodelist2.fn
inst/extdata/soma/outputSoma.rds
inst/extdata/vg/ABneutralSOMA.pdf inst/extdata/vg/ABneutral_MA1_1.pdf
inst/extdata/vg/Figure1.png
inst/extdata/vg/Figure2.pdf inst/extdata/vg/MA1_1.pdf inst/extdata/vg/MA1_2.pdf inst/extdata/vg/MA1_3.pdf inst/extdata/vg/MA2_3.pdf inst/extdata/vg/MA3.pdf
inst/extdata/vg/MAlines.png
inst/extdata/vg/SOMA1.pdf inst/extdata/vg/SOMA2.pdf
inst/extdata/vg/Trees.png
inst/extdata/vg/edgelist.fn
inst/extdata/vg/edgelist_MA2_3.fn
inst/extdata/vg/edgelist_MA3.fn
inst/extdata/vg/methylome-sample-region.png
inst/extdata/vg/methylome-sample.png
inst/extdata/vg/nodelist.fn
inst/extdata/vg/nodelist_MA2_3.fn
inst/extdata/vg/nodelist_MA3.fn
man/ABneutral.Rd man/ABneutralSOMA.Rd man/ABnull.Rd man/ABplot.Rd man/ABselectMM.Rd man/ABselectMMSOMA.Rd man/ABselectUU.Rd man/ABselectUUSOMA.Rd man/BOOTmodel.Rd man/FtestRSS.Rd man/buildPedigree.Rd man/dMatrix.Rd man/plotPedigree.Rd man/rc.meth.lvl.Rd vignettes/AlphaBeta.R vignettes/AlphaBeta.Rmd vignettes/AlphaBeta.pdf
vignettes/alphabeta.png
jlab-code/AlphaBeta documentation built on Aug. 22, 2020, 7:23 a.m.