ABplot: Plotting estimates

In jlab-code/AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Plotting estimates

Description

Plotting Estimating epimutation

Usage

ABplot(
  pedigree.names,
  output.dir,
  out.name,
  alpha = 0.5,
  geom.point.size = 2,
  geom.line.size = 0.9,
  plot.height = 8,
  plot.width = 11,
  plot.type = "both",
  lsq.line = "theory",
  intract = FALSE
)

Arguments

pedigree.names	Models output AB*.Rdata
output.dir	output directory
out.name	filename
alpha	ggplot parameters
geom.point.size	ggplot parameters
geom.line.size	ggplot parameters
plot.height	ggplot parameters
plot.width	ggplot parameters
plot.type	type of plot (data.only, fit.only, both)
lsq.line	Least Square Regression line (theory or pred)
intract	to see intarctive plot. (useing plotly)

Value

plot

Examples

# Get some toy data
file <- system.file("extdata/dm/","Col_CG_global_estimates_ABneutral.Rdata", package="AlphaBeta")
ABplot(pedigree.names=file, output.dir=getwd(), out.name="ABneutral")

jlab-code/AlphaBeta documentation built on April 23, 2022, 11:02 a.m.