ABnull: Run model that considers no accumulation of epimutations...

In jlab-code/AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Run model that considers no accumulation of epimutations (ABnull)

Description

Run model that considers no accumulation of epimutations (ABnull)

Usage

ABnull(pedigree.data, out.dir, out.name)

Arguments

pedigree.data	Generation table name, you can find sample file in
out.dir	outputdirectory
out.name	name of file

Value

ABnull RData file.

Examples

#Get some toy data
inFile <- readRDS(system.file("extdata/dm/","output.rds", package="AlphaBeta"))
pedigree <- inFile$Pdata
out.name <- "CG_global_estimates_ABnull"
out <- ABnull(pedigree.data = pedigree,
                  out.dir=getwd(),
                  out.name=out.name)

summary(out)

jlab-code/AlphaBeta documentation built on April 23, 2022, 11:02 a.m.