Man pages for jlab-code/AlphaBeta
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
| ABneutral | Run Model with no selection (ABneutral) |
| ABneutralSOMA | Model with no selection (outneutral) |
| ABnull | Run model that considers no accumulation of epimutations... |
| ABplot | Plotting estimates |
| ABselectMM | Run model with selection against spontaneous gain of... |
| ABselectMMSOMA | Model with selection against spontaneous gain of methylation... |
| ABselectUU | Run model with selection against spontaneous loss of... |
| ABselectUUSOMA | Model with selection against spontaneous loss of methylation... |
| BOOTmodel | Bootstrap analysis with the best model |
| buildPedigree | Building Pedigree |
| dMatrix | Constructing D-Matrices |
| FtestRSS | Comparison of different models and selection of best model |
| plotPedigree | Plot Pedigree |
| rc.meth.lvl | Calculating rc.Meth.lvl |
