cnaHotspotCells: Find the Cells with the highest CNA signal
In jlaffy/infercna: Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data
View source: R/cnaHotspotCells.R
cnaHotspotCells R Documentation
Find the Cells with the highest CNA signal
Description
Find Cells in the top nth quantile for CNA Signal values
Usage
cnaHotspotCells(cna, cell.quantile, gene.quantile = NULL)
Arguments
cna
a matrix of cell rows by cell columns containing CNA values
cell.quantile
calculate CNA measures including only top / "hotspot" cells according to their squared CNA values across all genes. Value between 0 and 1 denoting the quantile of cells to include.
Value
cell names in the top nth quantile, where n is specified via <cell.quantile>
jlaffy/infercna documentation built on Jan. 26, 2024, 11:24 p.m.
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View source: R/cnaHotspotCells.R
| cnaHotspotCells | R Documentation |
Find the Cells with the highest CNA signal
Description
Find Cells in the top nth quantile for CNA Signal values
Usage
cnaHotspotCells(cna, cell.quantile, gene.quantile = NULL)
Arguments
cna |
a matrix of cell rows by cell columns containing CNA values |
cell.quantile |
calculate CNA measures including only top / "hotspot" cells according to their squared CNA values across all genes. Value between 0 and 1 denoting the quantile of cells to include. |
Value
cell names in the top nth quantile, where n is specified via <cell.quantile>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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