cnaHotspotGenes: Find the Genes with the highest CNA signal
In jlaffy/infercna: Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data
View source: R/cnaHotspotGenes.R
cnaHotspotGenes R Documentation
Find the Genes with the highest CNA signal
Description
Find Genes in the top nth quantile for CNA Signal values
Usage
cnaHotspotGenes(cna, gene.quantile, cell.quantile = NULL)
Arguments
cna
a matrix of gene rows by cell columns containing CNA values
gene.quantile
calculate CNA measures including only top / "hotspot" genes according to their squared CNA values across all cells. Value between 0 and 1 denoting the quantile of genes to include.
Value
gene names in the top nth quantile, where n is specified via <gene.quantile>
jlaffy/infercna documentation built on Jan. 26, 2024, 11:24 p.m.
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View source: R/cnaHotspotGenes.R
| cnaHotspotGenes | R Documentation |
Find the Genes with the highest CNA signal
Description
Find Genes in the top nth quantile for CNA Signal values
Usage
cnaHotspotGenes(cna, gene.quantile, cell.quantile = NULL)
Arguments
cna |
a matrix of gene rows by cell columns containing CNA values |
gene.quantile |
calculate CNA measures including only top / "hotspot" genes according to their squared CNA values across all cells. Value between 0 and 1 denoting the quantile of genes to include. |
Value
gene names in the top nth quantile, where n is specified via <gene.quantile>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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