runMean: Rolling Means

In jlaffy/infercna: Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

Rolling Means

Description

Apply a rolling window mean to a matrix or vector.

Usage

runMean(m, k = 100, endrule = "mean", align = "center", verbose = T)

Arguments

m	a numeric vector or matrix. If the latter, each column will be processed separately.
k	width of rolling window. Default: 100
endrule	character string indicating how the values at the beginning and the end of the data should be treated. One of "mean", "trim", "keep", "constant". See caTools::runmean for more details. Default: 'mean'
align	specifies whether result should be centered (default), left-aligned or right-aligned. See caTools::runmean for more details. Default: 'center'
verbose	print progress messages. Default: TRUE

Value

a numeric vector or matrix of the same size as <m>. Only in case of endrule=trim, the output vectors will be shorter and output matrices will have fewer rows.

See Also

runmean

jlaffy/infercna documentation built on Jan. 26, 2024, 11:24 p.m.