useGenome: Select a Genome for infercna to use

In jlaffy/infercna: Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

Select a Genome for infercna to use

Description

Select your genome of choice at the start of an analysis. The available genomes in the current implementation are, for H.sapiens, hg38 (latest) and hg19 (preceding) and for mouse, mm10. You can see which genomes are available via availableGenomes().

Usage

useGenome(name)

Arguments

name	a character string of genome name. One of 'hg19', 'hg38', 'mm10'.

Value

genome variables are set internally. No return.

jlaffy/infercna documentation built on Jan. 26, 2024, 11:24 p.m.