annomap: One-bar annotation ggplot

In jlaffy/scrabble: Perform Exploratory Computational Analyses on Pre-Processed Single-Cell RNA-Sequencing Data

Description

one-bar annotation ggplot

Usage

annomap(X, title = NULL, x.title = NULL, pal = 1, angle = F,
  breaks = ggplot2::waiver(), x.num = T, flip = F, hide.legend = T,
  legend.pos = "top", ratio = 0.03, mar = 0.015, cols = NULL,
  cols.order = names(cols))

Arguments

X	named character vector of observations and groups (names); or a dataframe with first two columns as observations and groups.
title	annomap title. Default: NULL
x.title	x axis (observations) title (e.g. 'cells'). Default: NULL
pal	numeric value specifying different qualitative brewer palettes. See ggplot2::scale_fill_brewer for details. Default: 1
angle	logical indicating whether to angle title if flip = T. Default: T
breaks	set to NULL to remove x axis tick marks. Default: ggplot2::waiver()
x.num	enumerate observations on x axis? Default: T
flip	observations along y axis instead of x? Default: F
hide.legend	logical. Default: T
legend.pos	character string. See legend.position in ggplot2::theme for details. Default: 'top'
ratio	aspect ratio. If flip = T, ratio = 1/ratio.. Default: 0.03
mar	see plot.margin in ggplot2::themes for details. Default: 0.015
cols	custom colour palette. Option to name colours by groups to choose individual group colours. Default: NULL
cols.order	character vector with groups. Changing the order changes the assignment of colours to groups. Default: names(cols)

Value

ggplot

See Also

waiver,ggplot,scale_continuous,scale_x_discrete,geom_raster,ggtheme,theme,margin,scale_colour_brewer,scale_manual,coord_flip get_legend,rremove

jlaffy/scrabble documentation built on Nov. 16, 2019, 7:56 a.m.