hierarchy: Cell state hierarchy coordinates

In jlaffy/scrabble: Perform Exploratory Computational Analyses on Pre-Processed Single-Cell RNA-Sequencing Data

Description

Cell state hierarchy coordinates

Usage

hierarchy(m, quadrants = NULL, log.scale = T)

Arguments

m	matrix of cell state scores (cell rows; state columns)
quadrants	option to find pmax of a subset of columns and use this as a state quadrant. pass argument in the form of a list of character vectors (column names), where list elements should start from bottom and go from left to right. Default: NULL
log.scale	scale the hierarchy coordinates in log2 space. Default: T

Value

dataframe with X and Y coordinate values. mutate

jlaffy/scrabble documentation built on Nov. 16, 2019, 7:56 a.m.