plot.stData: Plot stData objects

In jmhewitt/telefit: Estimation and Prediction for Remote Effects Spatial Process Models

Description

This function provides basic plotting for telefit package data.

Usage

## S3 method for class 'stData'
plot(
  x,
  type = "response",
  t = NULL,
  p = NULL,
  map = "world",
  region = ".",
  coord.s = NULL,
  coord.r = NULL,
  zlim = NULL,
  fill.lab = NULL,
  lab.teleconnection = expression(alpha),
  fill.lab.width = 20,
  category.breaks = NULL,
  coords.knots = NULL,
  signif.telecon = F,
  dots = NULL,
  pattern = 1,
  lwd = 1.75,
  cutoff = 0.9,
  signif.level = 0.05,
  alpha = 0.2,
  zmid = 0,
  contour = c(F, F),
  ...
)

Arguments

x	Object of class stData to plot.
type	One of the following options to specify what type of plot to build response sd.response Plot standard deviation of response variable at each location. cat.response covariate remote teleconnection This plot only applies if the stData object contains information about teleconnection effects, i.e., if it is a simulated dataset or otherwise modified to include estimates of teleconnection effects. remote_cor This plot shows pointwise correlations between a local coordinate and the remote covariates. eof eof_scores eof_scree eof_cor This plot shows pointwise correlations with EOF patterns. local_cor This plot shows pointwise correlations with local covariates. teleconnection_knot_local
t	timepoint to plot. Will automatically plot the first timepoint if t=NULL.
p	column index of local covariate to plot if type='covariate'. Will automatically assume the local covariate data includes an intercept and will plot the second column if p=NULL.
map	name of map provided by the maps package. These include county, france, italy, nz, state, usa, world, world2. By default, all stData plots will include us state outlines.
region	name of subregions to include. Defaults to . which includes all subregions. See documentation for map for more details.
coord.s	if plot type is 'teleconnection', specifies the longitude and latitude of local coordinate for which to plot teleconnection effects. if NULL, the middle local coordinate will be plotted.
coord.r	if plot type is 'teleconnection_local', specifes the longitude and latitude of remote coordinate for which to plot associated teleconnection effects. if NULL, the middle remote coordinate will be plotted.
zlim	c(min, max) vector that specifies the colorscale limits
fill.lab	Optional label to override the default fill scale labels
lab.teleconnection	label used for fill scale in teleconnection plot
fill.lab.width	line width for fill scale label
category.breaks	[ncoords x ncats] list of breakpoints used for binning responses into categories
coords.knots	if plot type is 'remote', specifies the longitude and latitude of knot locations to overlay on the 'remote' plot
signif.telecon	if TRUE, will highlight significant grid cells if the plotting data contain a signif column
dots	additional named arguments with defaults to pass to additional functions
pattern	if type=='eof' this specifies which (remote) EOF pattern to plot or if type=='eof_scores' this (vector) specifies which (remote) EOF pattern scores to plot
lwd	line width for when plotting with signif.telecon==T
cutoff	Used to denote where this proportion of variance is achieved in the eof_scree plots
signif.level	significance level for eof_cor significance highlighting
alpha	the level of fading that should be applied to insignificant grid boxes when plotting significant effects
zmid	number that specifies the midpoint of the colorscale
contour	c(TRUE, TRUE) to plot local and remote responses as contours vs. observations
...	additional arguments to pass to functions

Value

a ggplot object with the specified map

Examples

data("coprecip")
p = plot(coprecip)

jmhewitt/telefit documentation built on Feb. 9, 2020, 7:15 p.m.