deepTools_matrix2nmat: Import deepTools coverage matrix to normalizedMatrix
In jmw86069/platjam: Platform Jam, biological platform importers.

deepTools_matrix2nmat

R Documentation

Import deepTools coverage matrix to normalizedMatrix

Description

Import deepTools coverage matrix to normalizedMatrix

Usage

deepTools_matrix2nmat(
  x = NULL,
  filename = NULL,
  signal_name = NULL,
  target_name = "target",
  background = 0,
  smooth = FALSE,
  target_is_single_point = FALSE,
  signal_is_categorical = FALSE,
  mat_grep = "[-0-9]+:[-0-9]+",
  upstream_grep = "^[-]",
  downstream_grep = "^[^-]",
  target_grep = "^0$",
  verbose = FALSE,
  ...
)

Details

This function is under active development.

Other jam import functions: coverage_matrix2nmat(), frequency_matrix2nmat(), import_lipotype_csv(), import_metabolomics_niehs(), import_nanostring_csv(), import_nanostring_rcc(), import_nanostring_rlf(), import_omics_data(), import_proteomics_PD(), import_proteomics_mascot(), import_salmon_quant(), process_metab_compounds_file()