design2layout: Convert experiment design into reasonable plot panel layout

In jmw86069/platjam: Platform Jam, biological platform importers.

Convert experiment design into reasonable plot panel layout

Description

Convert experiment design into reasonable plot panel layout

Usage

design2layout(SE, group_colname = NULL, run_colname = NULL, ...)

Details

This function is in development, and is intended for a specific scenario where an experiment design with optional batch/run can be represented in a sensible layout, with appropriate number of panel columns, and number of panel rows.

Value

list with elements:

• nrow: number of panel rows

• ncol: number of panel columns

• blank_pos: integer vector for blank panels, if any

• Group_ctm: summary info about the panel layout

• isamples: character vector indicating order to plot

See Also

Other jam utility functions: cardinality(), color_complement(), convert_PD_df_to_SE(), convert_imputed_assays_to_na(), curate_se_colData(), curate_to_df_by_pattern(), get_numeric_transform(), handle_df_args(), merge_proteomics_se(), nmat_summary(), nmatlist_summary(), rmd_tab_iterator(), rowNormScale(), summit_from_vector()

jmw86069/platjam documentation built on Sept. 26, 2024, 3:31 p.m.