inst/requirements.R

In johannesnicolaus/ASURAT_source: Assisting Interpretable Classifications in Single-cell Transcriptomics

install.packages(c("tidyverse", 
     "ggExtra", 
     "Matrix", 
     "BiocManager",
     "devtools",
     "ggExtra",
     "ggrepel",
     "plot3D",
     "DT",
     "viridis",
     "Rtsne",
     "umap",
     "Rcpp",
     "cluster",
     "Seurat"))

BiocManager::install(c("",
     "org.Hs.eg.db",
     "ComplexHeatmap",
     "circlize",
     "bayNorm",
     "sva",
     "limma",
     "destiny",
     "DOSE",
     "ontoProc",
     "clusterProfiler",
     "GOSemSim",
     "KEGGREST",
     "reactome.db"))

remotes::install_github("soedinglab/merlot")