print_jams_report: print_jams_report(opt=opt)

View source: R/print_jams_report.R

print_jams_reportR Documentation

Description

JAMSalpha function

Usage

print_jams_report(
  opt = opt,
  outputdir = NULL,
  elements = c("readplots", "taxonomy", "SixteenSid", "resfinder", "abricate",
    "plasmidfinder", "vfdb", "func"),
  plotucobias = FALSE,
  report_style = NULL
)

johnmcculloch/JAMS_BW documentation built on Sept. 1, 2024, 12:48 a.m.