Man pages for jordanaron22/AndalusiaAlgae
Autoregressive Bivariate HMM for Algae and Toxin Data
| BackwardLinear | Autoregressive Backward Algorithm adapted from Stanculescu et... |
| BackwardLinearHelper | Part of backward algorithm |
| BackwardLinearHelperMissing | Part of backward algorithm |
| CalcBetas | Calculates ordinal logistic regression parameters |
| CalcInit | Calculates latent state initial probabilities |
| CalcTran | Calculates latent state transition probabilities |
| ClassificationAlgae | Calculates probability of observed algae |
| ClassificationToxin | Calculates probability of observed toxin |
| CollapseBackw | Collapses backward probabilities |
| CollapseForw | Collapses forward probabilities |
| Cont2Ord | Continuous to discrete for toxin data |
| ForwardLinear | Autoregressive Forward Algorithm adapted from Stanculescu et... |
| ForwardLinearHelper | Part of forward algorithm |
| ForwardLinearHelperMissing | Part of forward algorithm |
| GenerateSimulatedMC | Generates simulated Markov chain data |
| K2Phi | Transforms negative binomial size parameter to phi |
| LogLikenbinom | Calculates log likelihood of negative binomial for algae data |
| Ord2Mat | Transforms ordinal regression parameters to classification... |
| Phi2K | Transforms negative binomial phi parameter to size |
| ProbSt | Calculates latent state probability at specific time |
| ProbWeights | Calculates relative weights of the binary Markov states |
| RunEM | Runs EM |
| SimData | Generates simulated data |
