ForwardLinear: Autoregressive Forward Algorithm adapted from Stanculescu et...

In jordanaron22/AndalusiaAlgae: Autoregressive Bivariate HMM for Algae and Toxin Data

Autoregressive Forward Algorithm adapted from Stanculescu et al

Description

Calculates forward probabilities accounting for autoregressive dependence in the toxin measurements

Usage

ForwardLinear(
  algae_data,
  toxin_data,
  time,
  init,
  tran,
  mu_a,
  k_a,
  tox_em,
  states,
  toxin_states
)

Arguments

algae_data	Algae count data
toxin_data	Toxin data measured in micro grams / OA equivalent
time	Day to calculate forward probability at
init	Initial Markov state probabilities
tran	Transition Markov state probabilities
mu_a	mean negative binomial parameter
k_a	size negative binomial parameter
tox_em	Classification matrix from ordinal regression parameters

Value

Return forward probabilities from day 1 to day time(variable name)

jordanaron22/AndalusiaAlgae documentation built on Feb. 18, 2025, 3:59 p.m.