CalcTran: Calculates latent state transition probabilities

In jordanaron22/AndalusiaAlgae: Autoregressive Bivariate HMM for Algae and Toxin Data

Calculates latent state transition probabilities

Description

Calculates latent state transition probabilities

Usage

CalcTran(
  forw,
  backw,
  tran,
  algae_data,
  toxin_data,
  mu_a,
  k_a,
  tox_em,
  states,
  toxin_states
)

Arguments

forw	Forward probabilities
backw	Backward probabilities
tran	Old Markov state transition probabilities
algae_data	Algae count data
toxin_data	Toxin data measured in micro grams / OA equivalent
mu_a	mean negative binomial parameter
k_a	size negative binomial parameter
tox_em	Classification matrix from ordinal regression parameters

Value

Returns initial probabilities

jordanaron22/AndalusiaAlgae documentation built on Feb. 18, 2025, 3:59 p.m.