RunEM: Runs EM

In jordanaron22/AndalusiaAlgae: Autoregressive Bivariate HMM for Algae and Toxin Data

Runs EM

Description

Runs EM algorithm and outputs estimated parameters

Usage

RunEM(algae_data, toxin_data, init, tran, mu_a, k_a, betas, threshold, epsilon)

Arguments

algae_data	Algae count data
toxin_data	Toxin data measured in micro grams / OA equivalent
init	Initial Markov state probabilities
tran	Old Markov state transition probabilities
mu_a	mean negative binomial parameter
k_a	size negative binomial parameter
betas	Ordinal logistic regression coefficients
threshold	Threshold for algae data. Values lower than threshold are set to 0

Value

Returns initial probabilities

jordanaron22/AndalusiaAlgae documentation built on Feb. 18, 2025, 3:59 p.m.