Man pages for joshwlambert/DAISIEsim
| are_area_params | Test if list has area parameters |
| are_rates | Determines if object x are rates |
| calc_next_timeval | Calculates when the next timestep will be. |
| create_area_params | Create named list of area parameters |
| create_rates | Create the rates per ?island |
| DAISIE_avg_half_life | Title |
| DAISIE_calc_clade_ana_rate | Calculate the clade-wide effective anagenesis rate. With... |
| DAISIE_calc_clade_clado_rate | Calculate the clade-wide cladogenesis rate. |
| DAISIE_calc_clade_ext_rate | Calculate the clade-wide extinction rate |
| DAISIE_calc_clade_imm_rate | Calculate the clade-wide immigration rate. |
| DAISIE_create_island_oceanic | Converts simulation output into island output |
| DAISIE_extract_stt_median | Extract the STT median from the output of 'DAISIE_sim' |
| DAISIE_format_CS_nonoceanic | Formats clade-specific simulation output into standard DAISIE... |
| DAISIE_format_CS_oceanic | Formats clade-specific simulation output into standard DAISIE... |
| DAISIE_half_life | Title |
| DAISIE_ONEcolonist | Does something |
| DAISIE_plot_sims | Plot island species-through-time (STT) plots |
| DAISIE_plot_stt | Create the Species-Through-Time plot. This is used to... |
| DAISIE_sample_event | Samples what event to happen next |
| DAISIE_sim | linear_neg' = linear decreasing function; 'sine' = symmetric... |
| DAISIE_sim_avg_half_life | Title |
| DAISIE_sim_core_1_4 | Internal function of the DAISIE simulation Taken from CRAN,... |
| DAISIE_sim_core_checked_1_4 | Runs one DAISIE simulation with a clade-specific carrying... |
| DAISIE_sim_half_life | Title |
| DAISIE_sim_update_state | Updates state of island given sampled event |
| DAISIE_sim_with_mainland | Simulate speciation, immigration and extinction on both... |
| get_ana_rate | Calculate anagenesis rate |
| get_clado_rate | Calculate cladogenesis rate |
| get_ext_rate | Function to describe changes in extinction rate through time.... |
| get_immig_rate | Calculate immigration rate |
| get_t_hor | Function to calculate and update horizon for maximum... |
| island_area | Function to describe changes in area through time. Adapted... |
| is_numeric_list | Determine if list has only numerical values. |
| translate_island_ontogeny | Translate user-friendly ontogeny codes to numerics |
| translate_sea_level | Translates user-friendly sea-level codes to numerics |
| update_rates | Calculates algorithm rates |
