DAISIE_plot_sims: Plot island species-through-time (STT) plots
In joshwlambert/DAISIEsim:

Description Usage Arguments Value Author(s) References See Also Examples

Produces STT plots. If only one type of species is present in the simulated islands, STT is plotted for all species. If two types are present, three plots are produced: STT for all, STT for type 1 and STT for type 2.

R plots with number of total, endemic and non-endemic STTs for different types of species for the entire time span the islands were simulated. 2.5-97.5th percentiles are plotted in light grey, 25-75th percentiles plotted in dark grey.

1 2	DAISIE_plot_sims(island_replicates, use_dev_new = TRUE, plot_plus_one = TRUE)

`island_replicates`	Island replicates in DAISIE format (produced in `DAISIE_sim` with `format = TRUE` option). Minimally, this must be a list, that has as much elements as replicates. Each element must be a list with the elements `island_age`, `not_present` and `stt_all`. `stt_all` must be a data frame with the column names `Time`, `nI`, `nA`, `nC` and `present`.
`use_dev_new`	Boolean to indicate to use `dev.new` before plotting. Set to `TRUE` for default behavior. Set to `FALSE` when plotting within a vignette
`plot_plus_one`	Boolean to indicate to plot all values plus one. Set to `TRUE` for default behavior. Set to `FALSE` to plot all values without adding one. Only works when there is one type of species

R plot.

Luis Valente

Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.

DAISIE_sim DAISIE_format_CS

### Plot islands with single process (only one type of species)
utils::data(islands_1type_1000reps)
DAISIE_plot_sims(
  island_replicates = islands_1type_1000reps,
  use_dev_new = FALSE
  )


### Plot island with type 1 and type 2
utils::data(islands_2types_1000reps)
DAISIE_plot_sims(
  island_replicates = islands_2types_1000reps,
  use_dev_new = FALSE
  )