Files in jr-leary7/SCISSORS
Identify cell subpopulations in single cell RNA-seq data

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/AnnotateMarkerGenes.R R/ChoosePCs.R R/ComputeSilhouetteScores.R R/ConvertGeneOrthologs.R R/CosineDist.R R/FindFilteredMarkers.R R/FindSpecificMarkers.R R/FindSubpopulationMarkers.R R/IntegrateSubclusters.R R/PrepareData.R R/ReclusterCells.R R/ReduceDimensions.R R/RunPHATE.R R/theme_yehlab.R README.Rmd README.md
SCISSORS.Rproj
inst/CITATION
man/AnnotateMarkerGenes.Rd man/ChoosePCs.Rd man/ComputeSilhouetteScores.Rd man/ConvertGeneOrthologs.Rd man/CosineDist.Rd man/FindFilteredMarkers.Rd man/FindSpecificMarkers.Rd man/FindSubpopulationMarkers.Rd man/IntegrateSubclusters.Rd man/PrepareData.Rd man/ReclusterCells.Rd man/ReduceDimensions.Rd man/RunPHATE.Rd
man/figures/README-broad-celltypes-1.png
man/figures/README-broad-markers-1.png
man/figures/README-integrate-reclust-1.png
man/figures/README-reclust-markers-1.png
man/figures/README-silhouette-dist-1.png
man/figures/README-spec-markers-1.png
man/figures/README-t-reclust-1.png
man/figures/README-umap-broad-cluster-1.png
man/theme_yehlab.Rd
vignettes/.DS_Store
vignettes/Clustering_Comparison.Rmd vignettes/Elyada.Rmd vignettes/PBMC.Rmd
vignettes/PBMC_CD3D_Expression.png
vignettes/PBMC_Final_Clustering.png
vignettes/PBMC_Original_Clusts.png
vignettes/PBMC_TCell_Subclust.png
vignettes/PBMC_TCell_Subclust_Markers.png
jr-leary7/SCISSORS documentation built on April 20, 2023, 8:21 p.m.