AnnotateMarkerGenes: Annotate differentially expressed genes using 'biomaRt'.
In jr-leary7/SCISSORS: Identify cell subpopulations in single cell RNA-seq data

AnnotateMarkerGenes

R Documentation

Annotate differentially expressed genes using `biomaRt`.

Description

This function uses the biomaRt package to fetch a user-defined list of attributes for a list of dataframes containing differentially expressed genes. Intended to be run directly after FindSubpopulationMarkers.

Usage

AnnotateMarkerGenes(
  marker.genes = NULL,
  species = "human",
  desired.annos = NULL
)

Arguments

`marker.genes`	The dataframe of marker genes generated by `FindSubpopulationMarkers`.
`species`	The species of the cells being analyzed. Defaults to "human", but also supports "mouse".
`desired.annos`	The vector containing the annotations you'd like to retrieve for each gene.