IntegrateSubclusters: Integrate estimated subcluster identities into the original...

In jr-leary7/SCISSORS: Identify cell subpopulations in single cell RNA-seq data

Integrate estimated subcluster identities into the original Seurat object.

Description

This function takes a list of outputs from ReclusterCells and integrates the new subcluster identities into the original Seurat object.

Usage

IntegrateSubclusters(
  original.object = NULL,
  reclust.results = NULL,
  do.plot = FALSE
)

Arguments

original.object	The original Seurat object. Defaults to NULL.
reclust.results	Either an individual Seurat object or a list of reclustering results as output from ReclusterCells. Defaults to NULL.
do.plot	Should the results be plotted on a dimension reduction plot? Defaults to FALSE.

Value

A Seurat object.

Author(s)

Jack Leary

See Also

ReclusterCells

Examples

## Not run: 
IntegrateSubclusters(original.object = pbmc, reclust.results = my_subclusts)

## End(Not run)

jr-leary7/SCISSORS documentation built on April 20, 2023, 8:21 p.m.