Files in jrboyd/dthic
HiC analysis using data.table

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/ALL_CLASSES.R R/class_HiC_matrix.R R/class_HiC_matrix.from_hic.R R/class_HiC_matrix_wDirectionality.R R/class_HiC_matrix_wInsulation.R R/class_HiC_parameters.R R/class_HiC_sample_set.R R/class_integrated_plots.R R/functions_bigInteract.R R/functions_delta_calc.R R/functions_directionalityIndex.R R/functions_insulation.R R/functions_matrix_helpers.R R/functions_plotting.R R/functions_tadness.R dev_Directionality.R dev_Directionality.bu.R man/HiC_matrix.Rd man/HiC_matrix.from_hic.Rd man/HiC_matrix_wDirectionality.Rd man/HiC_matrix_wInsulation.Rd man/HiC_parameters.Rd man/add_arch_plot.Rd man/add_matrix_plot.Rd man/apply_diagonal_zscore.Rd man/decrease_resolution.Rd man/directionality_of_index.Rd man/dt2mat.Rd man/fetchBigInteract.Rd man/fetch_hic_byGRanges.Rd man/ggplot_ref.Rd man/hello.Rd man/mat2dt.Rd man/plot_combined_hic.Rd man/plot_upperMatrix.Rd man/plot_upperMatrix_with_insulation.Rd man/subset_dt.Rd man/sync_height.Rd man/sync_width.Rd man/writeBigInteract_hicpro.Rd man/writeBigInteract_ibed.Rd

jrboyd/dthic documentation built on Oct. 4, 2022, 8:53 p.m.

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