writeBigInteract_hicpro: writeBigInteract_hicpro

In jrboyd/dthic: HiC analysis using data.table

writeBigInteract_hicpro

Description

writeBigInteract_hicpro

Usage

writeBigInteract_hicpro(
  fhicpro,
  bed_file = sub(".matrix$", "_abs.bed", fhicpro),
  group_name = NULL,
  output_root = NULL,
  cols = seqsetvis::safeBrew(1),
  index_method = c("a", "b", "ab")[1],
  remove_trans = TRUE,
  query_gr = NULL,
  max_dist = Inf,
  min_value = 0,
  cleanup_interact = TRUE,
  chr_sizes = "/slipstream/home/joeboyd/hg38_chrsizes.txt",
  autosql = "/slipstream/home/joeboyd/autoSql_bigInteract.txt"
)

Arguments

autosql

jrboyd/dthic documentation built on Oct. 4, 2022, 8:53 p.m.