HiC_parameters: HiC_parameters

In jrboyd/dthic: HiC analysis using data.table

HiC_parameters

Description

HiC_parameters

Usage

HiC_parameters(
  bin_size = 40000,
  diagonal_removed = T,
  canonical_chr_only = T,
  depth_normalization = T,
  quantile_normalization = F,
  log2_over_mean_normalization = T,
  n_insulation_bins = "auto",
  min_insulation_distance = 0,
  min_insulation_coverage = 0.3,
  n_delta_bins = "auto"
)

Arguments

n_delta_bins

jrboyd/dthic documentation built on Oct. 4, 2022, 8:53 p.m.