plot_upperMatrix_with_insulation: plot_upperMatrix_with_insulation

In jrboyd/dthic: HiC analysis using data.table

plot_upperMatrix_with_insulation

Description

plot_upperMatrix_with_insulation

Usage

plot_upperMatrix_with_insulation(
  hic_mat,
  chr,
  start,
  end,
  tile_type = c("diamond", "hex")[1],
  show_plot = T,
  main_title = NULL,
  max_dist = 10 * 10^6,
  point_size = 3.5,
  max_fill = NULL,
  hmap_colors = c("lightgray", "steelblue", "darkblue", "red", "red"),
  show_insulation_range = T,
  show_minmax = T,
  fill_limits = c(NA, NA),
  na.value = hmap_colors[length(hmap_colors)]
)

Arguments

show_minmax

jrboyd/dthic documentation built on Oct. 4, 2022, 8:53 p.m.